Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013025.1_1187_1268_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1187 - 1268

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTGCG

5'SS Class:

major

3'SS Sequence:

CCATCCTCACCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAC

U12 Branch Point Sequence:

CCATCCTCACCA

Flanking Amino Acid:

RRKANPQDKVHPTKSEFIRA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

1.1

63.8

40.9

Major BPS

60.1

0.25

1.1

62.9

34.3

Major PPT

66.7

0.38

0.9

58.9

36.7

Minor 5ss

35.2

-1.7

3.2

47.3

42.1

Minor BPS

50.1

-0

1.9

60.12

45.7

Associated Gene:

Gene:

GIT1

Ensembl Gene ID:

ENSAPLG00000027003

Chromosome:

PEDO01013025.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026402

21 - 5668

5648

ENSAPLT00000045436

21 - 5668

5648

ENSAPLT00000036267

21 - 5668

5648