Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013025.1_2115_2645_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2115 - 2645

Intron Length:

531

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCGCC

5'SS Class:

strong_major

3'SS Sequence:

ATGCACCCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAATAAC

U12 Branch Point Sequence:

TAACCCCCAATT

Flanking Amino Acid:

GHYIIPQMADSLDLSELAKA

Intron Amino Acid Position:

192

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

69.3

35.8

Major BPS

52.4

0.06

1.2

37.3

Major PPT

63.2

0.3

0.9

54.6

35.6

Minor 5ss

32.2

-2

3.3

41.8

45.1

Minor BPS

49.3

0.03

1.9

69.38

40.8

Associated Gene:

Gene:

GIT1

Ensembl Gene ID:

ENSAPLG00000027003

Chromosome:

PEDO01013025.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045436

21 - 5668

5648