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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013025.1_3630_3745_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3630 - 3745
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCACCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
CCCTCCTTCACC
Flanking Amino Acid:
NPEYSATRNQGRQKLARFNA
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
74.9
0.56
0.8
65.5
35.7
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
61.5
0.34
1.8
65.58
46.5

Associated Gene:

Gene:
GIT1
Ensembl Gene ID:
ENSAPLG00000027003
Chromosome:
PEDO01013025.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045436
21 - 5668
5648
ENSAPLT00000036267
21 - 5668
5648
ENSAPLT00000026402
21 - 5668
5648