Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013025.1_5539_5622_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5539 - 5622

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGTGCTG

5'SS Class:

major

3'SS Sequence:

CCTGTCCCCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAC

U12 Branch Point Sequence:

CCTTCCCTAACC

Flanking Amino Acid:

LRAAQESKHDSFVPCSEKIH

Intron Amino Acid Position:

596

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.1

57.1

47.2

Major BPS

59.7

0.24

1.1

61.2

32.6

Major PPT

71.2

0.48

0.8

61.7

34.9

Minor 5ss

-1.9

3.6

46.8

48.6

Minor BPS

68.1

0.55

1.7

75.12

41.7

Associated Gene:

Gene:

GIT1

Ensembl Gene ID:

ENSAPLG00000027003

Chromosome:

PEDO01013025.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045436

21 - 5668

5648

ENSAPLT00000036267

21 - 5668

5648

ENSAPLT00000026402

21 - 5668

5648