Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013033.1_2248_2643_F

Intron Information:

Intron Rank:

132496

Intron Class:

major

Intron Phase:

Intron Coordinates:

2248 - 2643

Intron Length:

396

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGGGAGAG

5'SS Class:

major

3'SS Sequence:

CTACTCTGTACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAAAAT

U12 Branch Point Sequence:

TTGACATAAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.1

0.38

1.1

40.4

Major BPS

61.8

0.29

1.1

67.7

34.6

Major PPT

73.8

0.54

68.1

37.3

Minor 5ss

22.5

-3.2

3.2

19.9

37.9

Minor BPS

48.5

-0

2.1

71.4

44.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021212

Chromosome:

PEDO01013033.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026696

2007 - 3438

1432