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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013034.1_10684_11229_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10684 - 11229
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCCTGCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAT
U12 Branch Point Sequence:
CATGCCGTGACA
Flanking Amino Acid:
LDGYFCENEQGRCYGGRCKT
Intron Amino Acid Position:
474

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.8
38.7
Major BPS
64.7
0.37
1.2
67
39.8
Major PPT
70
0.45
0.8
60.7
35.3
Minor 5ss
32.4
-2
3
40.4
45.7
Minor BPS
49.3
-0
2.2
62.8
43.7

Associated Gene:

Gene:
ADAM11
Ensembl Gene ID:
ENSAPLG00000016351
Chromosome:
PEDO01013034.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017078
5542 - 12960
7419