About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013034.1_12445_12861_F


Intron Information:

Intron Rank:
23

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
12445 - 12861

Intron Length:
417

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TAA|GTAAGCAGA

5'SS Class:
major

3'SS Sequence:
CCGCCACCCCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CACTGAC

U12 Branch Point Sequence:
GGACACTGACGC

Flanking Amino Acid:
IVLGGTGWGFKNIRRGRYDP

Intron Amino Acid Position:
693

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.3
0.69
1
71.7
40.1

Major BPS
61.3
0.28
1
52.7
34.2

Major PPT
61.2
0.25
0.9
50.5
33

Minor 5ss
40.5
-1.1
2.9
49
41.4

Minor BPS
37.6
-0.9
1.9
40.69
37.8

Associated Gene:

Gene:
ADAM11

Ensembl Gene ID:

Chromosome:
PEDO01013034.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

5542 - 12960
7419