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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013034.1_7819_7916_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7819 - 7916
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
GCTTCCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
ACCCTCTTACAC
Flanking Amino Acid:
FAALSSCQGLHGVFSDGRDT
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
69
35.7
Major BPS
69.2
0.48
1
61
37.1
Major PPT
82.8
0.74
0.8
76.6
32
Minor 5ss
33.7
-1.9
2.7
43.9
37
Minor BPS
46.6
-0.2
1.7
50.58
40.2

Associated Gene:

Gene:
ADAM11
Ensembl Gene ID:
ENSAPLG00000016351
Chromosome:
PEDO01013034.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017078
5542 - 12960
7419