About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013034.1_8859_8939_F


Intron Information:

Intron Rank:
8

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8859 - 8939

Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTGAGCACG

5'SS Class:
major

3'SS Sequence:
CTCGCCCTCGCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCCCTAG

U12 Branch Point Sequence:
TTGTCCCTAGCG

Flanking Amino Acid:
AKSVVNLADMIYKEQLNTRI

Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.7
0.63
1
64.1
41.7

Major BPS
43
-0.4
1.6
40.4
41.7

Major PPT
71.6
0.49
0.8
64.8
30.7

Minor 5ss
34.4
-1.8
2.8
38
40.8

Minor BPS
56.7
0.07
2
68.3
44.9

Associated Gene:

Gene:
ADAM11

Ensembl Gene ID:

Chromosome:
PEDO01013034.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

5542 - 12960
7419