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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013039.1_613_724_R

Intron Information:

Intron Rank:
148952
Intron Class:
minor-like
Intron Phase:
Intron Coordinates:
613 - 724
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
AT-CA
5'SS Sequence:
CAG|ATATCCCAA
5'SS Class:
weak_minor
3'SS Sequence:
CCAAACCCCGCCA|A
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
ATCCCAA
U12 Branch Point Sequence:
AGATCCCAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
36.9
-0.8
3.5
48.6
43.7
Major BPS
54.3
0.11
1.2
64.5
33.7
Major PPT
18.3
-1.8
4
35.2
29.9
Minor 5ss
52.7
0.09
2.6
73.8
42.7
Minor BPS
49.8
-0
2
63.63
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027592
Chromosome:
PEDO01013039.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030645
21 - 1018
998
ENSAPLT00000021669
21 - 1018
998
ENSAPLT00000020023
21 - 1018
998