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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013063.1_2687_2802_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2687 - 2802
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGTGCCTGATTT
Flanking Amino Acid:
RCDGHGLQGARTFWVAASVS
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
73.2
37.5
Major BPS
85
0.87
0.8
85.6
23
Major PPT
83.5
0.75
0.8
74.4
35.8
Minor 5ss
31.6
-2.1
3.4
43.4
44.3
Minor BPS
53.3
0.18
1.8
73.56
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019494
Chromosome:
PEDO01013063.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025505
2566 - 4895
2330