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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013076.1_533_2622_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
533 - 2622
Intron Length:
2090

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGACG
5'SS Class:
major
3'SS Sequence:
CTCTCTTTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATGAC
U12 Branch Point Sequence:
CTGGGGGTAACT
Flanking Amino Acid:
GIRKDGTMVFGYLSEEDVLD
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
63.1
43
Major BPS
49.9
-0
1.2
43
37.8
Major PPT
78.6
0.64
0.7
72.3
32.3
Minor 5ss
26.7
-2.7
2.9
23.8
36.7
Minor BPS
37.9
-0.8
2.8
58.45
50.5

Associated Gene:

Gene:
NAGPA
Ensembl Gene ID:
ENSAPLG00000004291
Chromosome:
PEDO01013076.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039164
21 - 7616
7596
ENSAPLT00000004408
21 - 7768
7748