Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013076.1_6543_7718_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6543 - 7718

Intron Length:

1176

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGGCT

5'SS Class:

strong_major

3'SS Sequence:

ATACTTTTCCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TTCTTTGTGATA

Flanking Amino Acid:

AGYYGSSCEHACPMGWYGPN

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

70.8

39.4

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

73.1

0.52

0.9

Minor 5ss

32.3

-2

3.6

48.7

Minor BPS

48.9

-0

64.38

Associated Gene:

Gene:

NAGPA

Ensembl Gene ID:

ENSAPLG00000004291

Chromosome:

PEDO01013076.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004408

21 - 7768

7748