Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013138.1_372_2018_F

Intron Information:

Intron Rank:

145103

Intron Class:

major

Intron Phase:

Intron Coordinates:

372 - 2018

Intron Length:

1647

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCCCGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

CCACCCTCATTC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

0.5

1.1

71.2

35.2

Major PPT

73.1

0.52

0.9

69.7

31.1

Minor 5ss

35.3

-1.7

3.4

50.1

46.5

Minor BPS

45.2

-0.3

1.8

48.69

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028268

Chromosome:

PEDO01013138.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021167

21 - 2991

2971