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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013139.1_10045_10442_F

Intron Information:

Intron Rank:
149034
Intron Class:
major
Intron Phase:
Intron Coordinates:
10045 - 10442
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAGC
5'SS Class:
major
3'SS Sequence:
TGTTTGATCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
TTGTGTTTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.5
41.5
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
72.7
0.51
0.9
70.6
39.9
Minor 5ss
35
-1.7
2.8
37
40.5
Minor BPS
57.1
0.21
1.8
68.56
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030163
Chromosome:
PEDO01013139.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025334
21 - 15717
15697
ENSAPLT00000025206
6758 - 15717
8960
ENSAPLT00000018873
21 - 15717
15697
ENSAPLT00000035334
21 - 15717
15697
ENSAPLT00000030482
21 - 15717
15697