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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013139.1_10509_10910_F

Intron Information:

Intron Rank:
149035
Intron Class:
major
Intron Phase:
Intron Coordinates:
10509 - 10910
Intron Length:
402

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACTTGT
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATCATTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
69.7
43.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
47
-0.3
2.6
58.7
45.8
Minor BPS
60.8
0.42
1.6
77.42
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030163
Chromosome:
PEDO01013139.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030482
21 - 15717
15697
ENSAPLT00000025334
21 - 15717
15697
ENSAPLT00000025206
6758 - 15717
8960
ENSAPLT00000018873
21 - 15717
15697
ENSAPLT00000035334
21 - 15717
15697