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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013139.1_15220_15614_F

Intron Information:

Intron Rank:
149025
Intron Class:
major
Intron Phase:
Intron Coordinates:
15220 - 15614
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATAGC
5'SS Class:
major
3'SS Sequence:
ATTTTAACTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
69.5
41.5
Major BPS
100
1.24
0.5
100
0
Major PPT
77.8
0.63
0.9
68.4
41.7
Minor 5ss
35
-1.7
2.8
37
40.5
Minor BPS
73.3
0.81
1.2
83.78
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030163
Chromosome:
PEDO01013139.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027361
21 - 15717
15697
ENSAPLT00000025334
21 - 15717
15697
ENSAPLT00000039264
21 - 15717
15697
ENSAPLT00000018873
21 - 15717
15697
ENSAPLT00000035334
21 - 15717
15697
ENSAPLT00000018747
21 - 15717
15697
ENSAPLT00000030482
21 - 15717
15697