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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013139.1_2377_4896_F

Intron Information:

Intron Rank:
149026
Intron Class:
major
Intron Phase:
Intron Coordinates:
2377 - 4896
Intron Length:
2520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATAACT
5'SS Class:
major
3'SS Sequence:
TGTTTGCTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
72.7
36.1
Major BPS
100
1.24
0.5
100
0
Major PPT
75.7
0.58
0.9
73.8
36.9
Minor 5ss
36.3
-1.5
3
48.1
41.5
Minor BPS
60.3
0.18
1.8
69.97
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030163
Chromosome:
PEDO01013139.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039264
21 - 15717
15697
ENSAPLT00000018873
21 - 15717
15697
ENSAPLT00000018747
21 - 15717
15697