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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013143.1_2348_2820_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2348 - 2820
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGGT
5'SS Class:
major
3'SS Sequence:
CTTCTTGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GCATTTCTAACA
Flanking Amino Acid:
EICLSECDIYSYNPDLDSDP
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.2
67.8
43.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
84.9
0.78
0.8
79.9
32.1
Minor 5ss
36.5
-1.5
3.7
55.9
48.3
Minor BPS
52.7
0.08
1.7
61.02
39

Associated Gene:

Gene:
MAF1
Ensembl Gene ID:
ENSAPLG00000009580
Chromosome:
PEDO01013143.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009983
21 - 4942
4922