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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013151.1_160_331_F

Intron Information:

Intron Rank:
150038
Intron Class:
major
Intron Phase:
Intron Coordinates:
160 - 331
Intron Length:
172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCACAA
U12 Branch Point Sequence:
GGGGTCACAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
50.7
0.02
1.2
61
37.5
Major PPT
85.3
0.79
0.7
80.1
25.2
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
43.3
-0.5
1.8
48.79
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030679
Chromosome:
PEDO01013151.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039215
21 - 2284
2264