Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013158.1_25146_26970_F

Intron Information:

Intron Rank:

150470

Intron Class:

major

Intron Phase:

Intron Coordinates:

25146 - 26970

Intron Length:

1825

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAAAG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGGTGCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

TTCTGCTCATCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

71.6

40.1

Major BPS

79.7

0.74

79.6

35.6

Major PPT

71.6

0.49

1.1

65.1

45.5

Minor 5ss

31.4

-2.1

3.1

46.4

Minor BPS

48.4

-0.1

2.2

66.27

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030880

Chromosome:

PEDO01013158.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041048

23379 - 27461

4083

ENSAPLT00000023095

24172 - 27461

3290