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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013172.1_108_217_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
108 - 217
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
CCCAAATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
GCCCCCTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
67.8
0.44
1
75
30.1
Major PPT
60.9
0.25
0.9
50
37.9
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
55.1
0.15
1.8
61.26
44.7

Associated Gene:

Gene:
EBI3
Ensembl Gene ID:
ENSAPLG00000031037
Chromosome:
PEDO01013172.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048502
21 - 1590
1570