Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013205.1_2366_2447_F

Intron Information:

Intron Rank:

124963

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2366 - 2447

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGAGTAGG

5'SS Class:

major

3'SS Sequence:

GGCCACCCCGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ACGACAT

U12 Branch Point Sequence:

TTTTTGGGGACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.3

0.46

1.1

62.1

43.9

Major BPS

48.5

-0

1.2

54.7

40.8

Major PPT

59.3

0.21

0.9

50.5

33.8

Minor 5ss

32.6

-2

2.8

43.3

43.7

Minor BPS

42.8

-0.5

2.6

66.19

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017294

Chromosome:

PEDO01013205.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036767

21 - 2738

2718

ENSAPLT00000044410

1642 - 2738

1097