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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013210.1_412_511_F

Intron Information:

Intron Rank:
124293
Intron Class:
major
Intron Phase:
Intron Coordinates:
412 - 511
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTATTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TATTCCACACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.2
0.48
0.9
65.6
34.9
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
44
-0.5
2.1
55.61
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017012
Chromosome:
PEDO01013210.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047594
21 - 1141
1121
ENSAPLT00000020845
21 - 1141
1121
ENSAPLT00000019529
21 - 1141
1121