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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013210.1_828_934_F

Intron Information:

Intron Rank:
124294
Intron Class:
major
Intron Phase:
Intron Coordinates:
828 - 934
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
CATCTCCTCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTCCAT
U12 Branch Point Sequence:
CCTCCCTCCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
34.5
Major BPS
52.4
0.06
1.3
64
41.7
Major PPT
75.5
0.57
0.8
69.2
30.9
Minor 5ss
35.6
-1.6
2.8
36.8
40.4
Minor BPS
46.7
-0.2
2
55.52
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017012
Chromosome:
PEDO01013210.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024157
21 - 1141
1121
ENSAPLT00000020845
21 - 1141
1121
ENSAPLT00000019529
21 - 1141
1121
ENSAPLT00000047594
21 - 1141
1121