Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013215.1_5963_6043_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5963 - 6043

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGGGGC

5'SS Class:

major

3'SS Sequence:

GGTGTCCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGGACAT

U12 Branch Point Sequence:

GTGTCCCCACAG

Flanking Amino Acid:

PTLQTKVFKYRIWDMNQKSL

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

64.8

41.3

Major BPS

43.9

-0.3

1.4

46.4

Major PPT

66.4

0.37

0.9

57.9

38.6

Minor 5ss

30.1

-2.3

3.5

41.6

45.3

Minor BPS

40.6

-0.8

2.1

46.68

45.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029787

Chromosome:

PEDO01013215.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042072

943 - 6804

5862

ENSAPLT00000038757

4537 - 6804

2268