Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013229.1_140_677_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

140 - 677

Intron Length:

538

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTGATCCTA

5'SS Class:

weak_major

3'SS Sequence:

ACCCTTATCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATCCAT

U12 Branch Point Sequence:

TGACCCTTATCC

Flanking Amino Acid:

IRDPNPSETISVPNSNDPDP

Intron Amino Acid Position:

108

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.7

0.09

1.1

51.1

41.3

Major BPS

69.5

0.49

1.2

78.7

34.9

Major PPT

70.5

0.46

0.9

61.7

38.1

Minor 5ss

-1.2

3.3

57.4

46.7

Minor BPS

63.2

0.39

1.6

70.09

40.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026411

Chromosome:

PEDO01013229.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038492

33 - 999

967