Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013241.1_19978_21438_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

19978 - 21438

Intron Length:

1461

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTT|GTGTGCCCT

5'SS Class:

weak_major

3'SS Sequence:

GAACCGCTCCGAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGGAAC

U12 Branch Point Sequence:

CGGGCTGGAACC

Flanking Amino Acid:

LMVRETFEEFPCGGANGSAG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.3

0.15

1.1

49.7

40.5

Major BPS

44.9

-0.3

1.4

50.7

41.5

Major PPT

44.6

-0.3

1.6

39.6

Minor 5ss

43.7

-0.7

42.6

Minor BPS

41.6

-0.6

2.1

47.03

42.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000015748

Chromosome:

PEDO01013241.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021849

19933 - 34437

14505