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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013241.1_21600_34040_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21600 - 34040
Intron Length:
12441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGGTCATTCACA
Flanking Amino Acid:
GNFLVMYVIVRYTKMKTATN
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
71.2
34.2
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
27.1
-2.6
3.2
35
41.6
Minor BPS
55
0.15
2.1
69.37
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015748
Chromosome:
PEDO01013241.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021849
19933 - 34437
14505