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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013250.1_1660_2272_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1660 - 2272
Intron Length:
613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAA
U12 Branch Point Sequence:
GCTGTTTCAACC
Flanking Amino Acid:
DYDALDVANKIGII*
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
73
0.57
1.2
77.7
37.1
Major PPT
85.6
0.8
0.8
80.4
31.6
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
49.8
-0
1.6
58.24
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000000604
Chromosome:
PEDO01013250.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000727
1645 - 2872
1228