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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013259.1_61_881_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
61 - 881
Intron Length:
821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
TTTGTTTGAATT
Flanking Amino Acid:
RSKISQVLGNEIK
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
75.8
0.58
1
71.2
43.2
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
62.5
0.47
1.5
79.72
37

Associated Gene:

Gene:
TP53I11
Ensembl Gene ID:
ENSAPLG00000006214
Chromosome:
PEDO01013259.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006453
52 - 3496
3445