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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013270.1_13009_17798_R

Intron Information:

Intron Rank:
147115
Intron Class:
major
Intron Phase:
Intron Coordinates:
13009 - 17798
Intron Length:
4790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTGTA
5'SS Class:
major
3'SS Sequence:
TTTTGAAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
GTATTTTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76
33
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69.8
0.45
1
63.9
41
Minor 5ss
42.4
-0.8
3.1
58.1
46.4
Minor BPS
56
0.27
1.5
71.62
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026449
Chromosome:
PEDO01013270.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027448
10150 - 18579
8430