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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013281.1_10297_10844_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10297 - 10844
Intron Length:
548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CCCTCCTTATTT
Flanking Amino Acid:
RFGLATVSTKGLSADSKPTV
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
71.5
40.2
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
82.9
0.74
0.8
80.7
29.7
Minor 5ss
27.4
-2.6
2.7
31.3
42.4
Minor BPS
61.4
0.44
1.7
70.91
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007746
Chromosome:
PEDO01013281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025606
3116 - 141609
138494