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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013281.1_12003_27806_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12003 - 27806
Intron Length:
15804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTGCCAGCAAAA
Flanking Amino Acid:
GLNVSSLSKKSEEDEKLKKR
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
77.4
0.62
1
72.5
42.4
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
40.5
-0.7
2.3
55.95
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007746
Chromosome:
PEDO01013281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025606
3116 - 141609
138494