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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013281.1_1546_2234_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1546 - 2234
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CAAATCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GCTTCACTGACG
Flanking Amino Acid:
WTLTNVLHNLVMYLLLHTVK
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.6
37.6
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
62.7
0.29
0.9
54.9
35.7
Minor 5ss
30.2
-2.3
2.8
34
35
Minor BPS
48.2
-0.2
2
57.69
43.6

Associated Gene:

Gene:
ORMDL2
Ensembl Gene ID:
ENSAPLG00000005682
Chromosome:
PEDO01013281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005873
997 - 2408
1412