About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013281.1_3152_3717_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3152 - 3717
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGCG
5'SS Class:
major
3'SS Sequence:
TCCCCCACCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CGTTAATTAATT
Flanking Amino Acid:
AEPVELHKLKLAELKQECLA
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
53.2
43
Major BPS
83
0.82
0.8
82
24.9
Major PPT
68.4
0.41
0.8
61.9
27
Minor 5ss
34
-1.8
3.7
47.7
48
Minor BPS
57.9
0.33
1.8
75.07
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007746
Chromosome:
PEDO01013281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025606
3116 - 141609
138494