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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013281.1_3818_4101_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3818 - 4101
Intron Length:
284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACGCACG
5'SS Class:
major
3'SS Sequence:
TCTTCCCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCATCATTAATT
Flanking Amino Acid:
NRLQAYLEEHAEEEANEEDV
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
57.7
46.8
Major BPS
100
1.24
0.5
100
0
Major PPT
84.5
0.78
0.7
81.7
23.3
Minor 5ss
39.1
-1.2
3
50.3
45.8
Minor BPS
70.6
0.72
1.6
82.08
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007746
Chromosome:
PEDO01013281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025606
3116 - 141609
138494