Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013281.1_81377_81470_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

81377 - 81470

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACCCGCA

5'SS Class:

major

3'SS Sequence:

TTTTCCCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CGCTCAC

U12 Branch Point Sequence:

CCTCGCTCACCC

Flanking Amino Acid:

SSRPPPASPRGCPGEQAPRS

Intron Amino Acid Position:

455

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.37

1.3

57.1

42.5

Major BPS

57.5

0.19

1.1

60.7

37.6

Major PPT

89.5

0.89

0.6

81.6

30.4

Minor 5ss

41.1

-1

3.4

47.2

Minor BPS

42.5

-0.5

2.1

51.58

45.7

Associated Gene:

Gene:

SPATS2

Ensembl Gene ID:

ENSAPLG00000008110

Chromosome:

PEDO01013281.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008439

80338 - 102861

22524