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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013281.1_82082_83022_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
82082 - 83022
Intron Length:
941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTTTCTCTGAAG
Flanking Amino Acid:
QLVELRADIKHFVSERKYDE
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
78
0.63
1
79.5
26.5
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
55
0.01
1.9
68.48
39

Associated Gene:

Gene:
SPATS2
Ensembl Gene ID:
ENSAPLG00000008110
Chromosome:
PEDO01013281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008439
80338 - 102861
22524