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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013281.1_93004_93809_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
93004 - 93809
Intron Length:
806

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCGCC
5'SS Class:
major
3'SS Sequence:
CTTTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
AGCTGCTCACCT
Flanking Amino Acid:
VDRTVQAFMEGNASEVLKEW
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
65.5
42
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
85.3
0.79
0.8
84.6
30.3
Minor 5ss
43.1
-0.8
3.2
60
44.7
Minor BPS
45.3
-0.2
2.2
63.15
46.7

Associated Gene:

Gene:
SPATS2
Ensembl Gene ID:
ENSAPLG00000008110
Chromosome:
PEDO01013281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008439
80338 - 102861
22524