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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013281.1_94279_100323_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94279 - 100323
Intron Length:
6045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAA
U12 Branch Point Sequence:
TTTGTCTTCACA
Flanking Amino Acid:
MSKKQNPKDPSGFIFDVQ
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
64.9
0.37
1
61
37.5
Major PPT
85
0.79
0.8
80
32.1
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
64.5
0.45
1.9
78.35
38.8

Associated Gene:

Gene:
SPATS2
Ensembl Gene ID:
ENSAPLG00000008110
Chromosome:
PEDO01013281.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008439
80338 - 102861
22524