Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013307.1_1689_3176_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1689 - 3176

Intron Length:

1488

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTATGAGTA

5'SS Class:

strong_major

3'SS Sequence:

ATGCTGCTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAA

U12 Branch Point Sequence:

TTCTTTTGGATG

Flanking Amino Acid:

TNAGKTYTFLGTEDDIGVLP

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.4

0.81

0.9

76.9

31.7

Major BPS

73.5

0.59

81.3

29.9

Major PPT

73.2

0.52

65.3

40.6

Minor 5ss

40.1

-1.1

3.4

55.5

48.7

Minor BPS

50.2

-0.1

1.5

57.68

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000011657

Chromosome:

PEDO01013307.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012126

375 - 3385

3011