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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013311.1_1618_3121_F

Intron Information:

Intron Rank:
125812
Intron Class:
major
Intron Phase:
Intron Coordinates:
1618 - 3121
Intron Length:
1504

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCAC
5'SS Class:
major
3'SS Sequence:
CCTTAATCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTTCCTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
65.6
40.5
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
72.1
0.5
0.9
65
35
Minor 5ss
37.5
-1.4
3.2
50.1
46.5
Minor BPS
92.8
1.32
0.7
94.44
20.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017783
Chromosome:
PEDO01013311.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038558
581 - 3828
3248