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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013316.1_90_211_R

Intron Information:

Intron Rank:
134870
Intron Class:
major
Intron Phase:
Intron Coordinates:
90 - 211
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTGTGA
5'SS Class:
major
3'SS Sequence:
ATTCTCCTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATCTTCTCAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.6
41.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
67.1
0.39
1
64.7
36.1
Minor 5ss
35.1
-1.7
3.4
47.8
47.7
Minor BPS
62.5
0.25
1.6
65.57
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019900
Chromosome:
PEDO01013316.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028424
21 - 1062
1042