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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013327.1_4186_5593_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4186 - 5593
Intron Length:
1408

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CTCTCCTCACCT
Flanking Amino Acid:
QGFTTRYRIYREFARWKVNN
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
78.8
0.65
0.8
73.3
31.7
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
57.9
0.33
1.9
75.75
46.8

Associated Gene:

Gene:
BRINP2
Ensembl Gene ID:
ENSAPLG00000019011
Chromosome:
PEDO01013327.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021050
2179 - 5888
3710
ENSAPLT00000046847
3031 - 8993
5963