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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013333.1_1959_2160_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1959 - 2160
Intron Length:
202

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCCGAC
5'SS Class:
major
3'SS Sequence:
GGTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
CCCTCAGTGACA
Flanking Amino Acid:
LLHLVHAALERRYPERQEKL
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
57.8
42
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
71.3
0.48
0.9
61.9
39.9
Minor 5ss
41.1
-1
3.5
58.4
46.5
Minor BPS
44.9
-0.4
2.3
54.83
44.3

Associated Gene:

Gene:
FLAD1
Ensembl Gene ID:
ENSAPLG00000023792
Chromosome:
PEDO01013333.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022898
473 - 3227
2755