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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013333.1_2538_2914_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2538 - 2914
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
ATTCTGCTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCACCAT
U12 Branch Point Sequence:
GATCCCTGCACC
Flanking Amino Acid:
PQYMRVNPLLDWTYRDIWEF
Intron Amino Acid Position:
452

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
58.5
40.7
Major BPS
44.2
-0.3
1.4
48.7
44.6
Major PPT
75.7
0.58
0.9
68.9
36.6
Minor 5ss
26.3
-2.7
3.2
28.5
38.7
Minor BPS
49.8
-0
1.9
63.38
41.2

Associated Gene:

Gene:
FLAD1
Ensembl Gene ID:
ENSAPLG00000023792
Chromosome:
PEDO01013333.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022898
473 - 3227
2755