About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013357.1_1681_2256_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
1681 - 2256
Intron Length:
576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTACGTACG
5'SS Class:
weak_major
3'SS Sequence:
TTTGTCGCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
TGGTGTTTAACT
Flanking Amino Acid:
ENALPMMLAEPPQNLIAQSQ
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.4
57.7
46.8
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
79.8
0.67
0.9
73.8
36.9
Minor 5ss
36.8
-1.5
2.9
47.8
41
Minor BPS
66.2
0.59
1.8
80.25
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022707
Chromosome:
PEDO01013357.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044808
21 - 2318
2298