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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013371.1_973_1435_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
973 - 1435
Intron Length:
463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCACCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTCCAC
U12 Branch Point Sequence:
CCTCTCCCACCC
Flanking Amino Acid:
LAEEIFHLQSRYRGSFWRAL
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
71.2
34.5
Major BPS
52.2
0.06
1.4
64.2
43
Major PPT
70.1
0.45
0.9
61.9
33.8
Minor 5ss
26.8
-2.7
2.9
32.6
42.4
Minor BPS
40.2
-0.7
2
47.95
41.8

Associated Gene:

Gene:
STING1
Ensembl Gene ID:
ENSAPLG00000023809
Chromosome:
PEDO01013371.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027130
21 - 5053
5033