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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01013425.1_512_590_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
512 - 590
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCCTT
5'SS Class:
major
3'SS Sequence:
TCCCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
GGGTCCTGACCC
Flanking Amino Acid:
SEDSEASEAEGEKAPKPKKK
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
68.8
43.8
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
73.3
0.52
0.7
64.8
30.7
Minor 5ss
37.9
-1.4
3.3
48.3
47.3
Minor BPS
51.7
0.03
1.8
61.03
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030472
Chromosome:
PEDO01013425.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048244
21 - 1898
1878